FROM zhu-ying-docker.pkg.coding.net/kszy/public/micromamba:1.5.8-bookworm-slim
ARG MAMBA_DOCKERFILE_ACTIVATE=1
ADD mambarc /root/.mambarc
RUN micromamba install -y -n base -c conda-forge -c bioconda -c default ensembl-vep=104 bcftools tabix
RUN micromamba clean
RUN pip config set global.index-url https://pypi-1703563938750:504b6dbe8de1f29495ad7efc6012a42a08e9cb2b@zhu-ying-pypi.pkg.coding.net/kszy/pypi/simple
RUN pip install setuptools==57.5.0
ADD autopvs1/ /data/autopvs1/
ADD setup.py setup.cfg /data/
RUN pip install /data
RUN rm /data -rf